Before you jump in, ring up and get a quote from a reliable Honda dealer. A good dealer should be able to give you a quote over the phone, as they should know how long such a job will take, and just what parts could be needed.
I believe that one of the issues with doing clearances yourself (and I haven't) is that if they are wrong, you need to have a selection of the shims on hand, as you won't know what you need until you've got into the top end and done the measurements.